species:   Scscl
pid:       PID1657
parent:    Ssc-milR-133
paralog:   
locus:     NW_001820829.1:849458-849496
matures:   ['GCAGCAUUCGUGGGACACA', 'UGUUGCAAAUGGUGGUG']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820829.1:849458-849496

17 out of bounds
9 alignments
9 proper strand
9 stranded perfect matches

************************************** 
UGUUGCAAAUGGUGGUGUGGCAGCAUUCGUGGGACACAA
((((.((((((.((......)).))))..)).))))...
-------------------GCAGCAUUCGUGGGACACA- l=19 a=2 c
UGUUGCAAAUGGUGGUG---------------------- l=17 a=0 c*
-------------------GCAGCAUUCGUGGGACACA- l=19 a=2 ma
UGUUGCAAAUGGUGGUG---------------------- l=17 a=0 ma*

-------------------GCAGCAUUCGUGGGACACA- l=19 a=2 (c,ma)
-------------------GCAGCAUUCGUGGGACACAA l=20 a=1 
-----------------UGGCAGCAUUCGUGGGACA--- l=19 a=1 
-----------------UGGCAGCAUUCGUGGGACACAA l=22 a=1 
----------------GUGGCAGCAUUCGUGGGACACAA l=23 a=1 
---------------UGUGGCAGCAUUCGUGGGACACA- l=23 a=1 
--------------GUGUGGCAGCAUUCGUGGGAC---- l=21 a=1 
------------UGGUGUGGCAGCAUUCGUGGGAC---- l=23 a=1 

mb-01011
ax-1001001
ku-01
ss-101011101000
fn-111
